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  "Title": "Linkage Map Construction using the MSTmap Algorithm",
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  "Description": "Functions for Accurate and Speedy linkage map\nconstruction, manipulation and diagnosis of Doubled Haploid,\nBackcross and Recombinant Inbred 'R/qtl' objects. This includes\nextremely fast linkage map clustering and optimal marker\nordering using 'MSTmap' (see Wu et al.,2008).",
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      "title": "Additional functions for linkage map construction and manipulation of R/qtl objects.",
      "topics": [
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      ]
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      "topics": [
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    },
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      "title": "Break linkage groups of an 'qtl' cross object",
      "topics": [
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      "title": "Combine linkage maps from multiple 'qtl' cross objects",
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      "title": "Consensus genotypes for clonal genotype groups",
      "topics": [
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      "title": "Find and report genotype clones",
      "topics": [
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      "topics": [
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    },
    {
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      "topics": [
        "mapBCu"
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      "title": "A constructed linkage map for a doubled haploid wheat population",
      "topics": [
        "mapDH"
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      "page": "mapDHf",
      "title": "An unconstructed marker set for a doubled haploid wheat population",
      "topics": [
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      "title": "Simulated constructed linkage map for a self pollinated F2 barley population",
      "topics": [
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      "title": "Extremely fast linkage map construction for 'qtl' objects using MSTmap.",
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        "mstmap.cross"
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      "title": "Extremely fast linkage map construction for data frame objects using MSTmap.",
      "topics": [
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    {
      "page": "pp.init",
      "title": "Parameter initialization function",
      "topics": [
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      "page": "profileGen",
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      "topics": [
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      "page": "profileMark",
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      "topics": [
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