The package in outline | Marker data | Construction | The choice of p.value | Diagnosing genotypes | Diagnosing markers and intervals | Heat maps | Setting markers aside and reintroducing them | Further documentation | Citing ASMap | References
Package: ASMap 1.1-1
ASMap: Linkage Map Construction using the MSTmap Algorithm
Functions for Accurate and Speedy linkage map construction, manipulation and diagnosis of Doubled Haploid, Backcross and Recombinant Inbred 'R/qtl' objects. This includes extremely fast linkage map clustering and optimal marker ordering using 'MSTmap' (see Wu et al.,2008).
Authors:
ASMap_1.1-1.tar.gz
ASMap_1.1-1.zip(r-4.7-x86_64)ASMap_1.1-1.zip(r-4.7-arm64)ASMap_1.1-1.zip(r-4.6-x86_64)ASMap_1.1-1.zip(r-4.6-arm64)ASMap_1.1-1.zip(r-4.5-x86_64)
ASMap_1.1-1.tgz(r-4.6-x86_64)ASMap_1.1-1.tgz(r-4.6-arm64)ASMap_1.1-1.tgz(r-4.5-x86_64)ASMap_1.1-1.tgz(r-4.5-arm64)
ASMap_1.1-1.tar.gz(r-4.7-arm64)ASMap_1.1-1.tar.gz(r-4.7-x86_64)ASMap_1.1-1.tar.gz(r-4.6-arm64)ASMap_1.1-1.tar.gz(r-4.6-x86_64)
ASMap_1.1-1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ASMap/json (API)
| # Install 'ASMap' in R: |
| install.packages('ASMap', repos = c('https://drj001.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/drj001/asmap/issues
Pkgdown/docs site:https://drj001.github.io
Datasets:
- mapBC - A constructed linkage map for a backcross barley population
- mapBCu - An unconstructed marker set for a backcross barley population
- mapDH - A constructed linkage map for a doubled haploid wheat population
- mapDHf - An unconstructed marker set for a doubled haploid wheat population
- mapF2 - Simulated constructed linkage map for a self pollinated F2 barley population
Last updated from:73ff1f342e. Checks:15 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 238 | ||
| linux-devel-x86_64 | OK | 212 | ||
| source / vignettes | OK | 247 | ||
| linux-release-arm64 | OK | 156 | ||
| linux-release-x86_64 | OK | 170 | ||
| macos-release-arm64 | OK | 150 | ||
| macos-release-x86_64 | OK | 275 | ||
| macos-oldrel-arm64 | OK | 131 | ||
| macos-oldrel-x86_64 | OK | 381 | ||
| windows-devel-arm64 | OK | 308 | ||
| windows-devel-x86_64 | OK | 227 | ||
| windows-release-arm64 | OK | 252 | ||
| windows-release-x86_64 | OK | 129 | ||
| windows-oldrel-x86_64 | OK | 125 | ||
| wasm-release | OK | 125 |
Exports:alignCrossbreakCrosscombineMapfixClonesgenClonesheatMapmergeCrossmstmapmstmap.crossmstmap.data.framepp.initprofileGenprofileMarkpullCrosspushCrosspValuequickEststatGenstatMarksubsetCross
Dependencies:dotCall64fieldsgtoolslatticemapsqtlRColorBrewerRcppspamviridisLite
